Germline Copy Number Variants Blacklist Data Version hg38

An updated CNV blacklist, used for GISTIC, derived from a SNP6 array analysis with Cancer Gene Census loci removed

Usage

hg38_blacklist

Format

A data frame with 7,285 rows and 6 columns:

id

Unique ID for CNV

chr

Chromosome of CNV

start

CNV start location

end

CNV end location

flanking.start

Start location of region flanking CNV

flanking.end

End location of region flanking CNV

Source

https://github.com/beroukhim-lab/gistic_reference/tree/main